Install package in R

Regular packages

in Shell

in R

install.packages("affy",lib="~/Library/R",dependencies=TRUE)

or

install.packages("affy",lib="~/Library/R",dependencies=TRUE,contriburl="http://bioconductor.org/packages/2.1/bioc/src/contrib/")
install.packages('ape',repos='http://cran.us.r-project.org')

Packages from Bioconductor

in R

source("http://bioconductor.org/biocLite.R")
biocLite("affy")
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